ExperimentSetReplicate

ExperimentSet4DNESDADW6RV
released
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in situ Hi-C on cerebellar granule neurons with ubash3b enhancer sgRNA isolated using FANS at day 14 after in vivo electroporation from dCas9-KRAB mouse postnatal day 20

   August 13th, 2025 at 3:35pm

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
cerebellar granule neuron - 14 days old
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: MboI

15 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESDADW6RV
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI5MUL6D9
551.44m
60.705%
15.242%
24.053%
Experiment
4DNEXX5YUGU2
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIGKICY9Z
88.4m
65.153%
13.369%
21.478%
Experiment
4DNEXRJSS8ZD
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIV6WAUWN
86.05m
62.502%
10.739%
26.759%
Experiment
4DNEXEUWIB61
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIPC4GRON
88.73m
62.344%
9.809%
27.847%
Experiment
4DNEXDIMV9S4
Bio Rep 4, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIQL12BIR
86.78m
60.602%
9.188%
30.21%
Experiment
4DNEXHL2FHIY
Bio Rep 5, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIJP3JYYR
186.69m
55.144%
22.478%
22.378%
Experiment
4DNEXHVF8WA9
Bio Rep 6, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI3JC9WTJ
83.11m
64.163%
16.413%
19.423%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESDADW6RV
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI5WQDFVW
250000