ExperimentSetReplicate

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ExperimentSet4DNESCXE1LCX
released
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in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 45 days to atrial cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESCXE1LCX
Multiple Experiments
File
4DNFI4OQXX1J
contact list-combined (pairs)
14.52 GB
File
4DNFIF78U26G
contact matrix (hic)
4.34 GB
File
4DNFIX5V9GBA
contact matrix (mcool)
2.93 GB
File
4DNFIFWKD9NT
compartments (bw)
205.89 kB
File
4DNFI49HCTA7
boundaries (bed)
162.94 kB
File
4DNFISS4GJNM
insulation score-diamond (bw)
7.93 MB
Experiment
4DNEXPAAO15A
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
4DNFIIJBJHC6
alignments (bam)
146.16 GB
File
4DNFIENNNMVZ
contact list-replicate (pairs)
8.01 GB
Experiment
4DNEX9PNCXSD
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
4DNFIL5BOSA4
alignments (bam)
143.34 GB
File
4DNFI2GZCSDM
contact list-replicate (pairs)
7.92 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESCXE1LCX
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI4OQXX1J
850.94m
47.666%
40.763%
11.57%
Experiment
4DNEXPAAO15A
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIENNNMVZ
458.83m
46.85%
40.799%
12.352%
Experiment
4DNEX9PNCXSD
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFI2GZCSDM
453.68m
48.433%
39.268%
12.299%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESCXE1LCX
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIX5V9GBA
None