ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNESCWV8EX7
released
View JSON

RNA-seq on wild-type WTC-11 iPSC cells differentiated for 15 days to ventricular cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Experiment
4DNEXFUJ2M55
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI13N4FMB
read positions (bam)
3.49 GB
File
4DNFI3UM31UB
read counts (bw)
132.72 MB
File
4DNFI92F5LME
gene expression (tsv)
10.55 MB
File
4DNFIDL3WTWQ
isoform expression (tsv)
30.09 MB
Experiment
4DNEXPNF2HQZ
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFITMA1BDN
read positions (bam)
3.12 GB
File
4DNFID3C4PNI
read counts (bw)
128.21 MB
File
4DNFI11VJ9WC
gene expression (tsv)
10.55 MB
File
4DNFIACE3NG8
isoform expression (tsv)
30.07 MB
Experiment
4DNEXJWU2N8Q
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIYLO35EF
read positions (bam)
3.37 GB
File
4DNFIPLRAXAX
read counts (bw)
145.33 MB
File
4DNFICJDNDZP
gene expression (tsv)
10.56 MB
File
4DNFISG5NOO1
isoform expression (tsv)
30.08 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXFUJ2M55
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI13N4FMB
52.57m
45.8m
Experiment
4DNEXPNF2HQZ
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFITMA1BDN
45.92m
40.36m
Experiment
4DNEXJWU2N8Q
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFIYLO35EF
51.11m
45.12m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXFUJ2M55
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI92F5LME
15.1m
44
Experiment
4DNEXPNF2HQZ
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI11VJ9WC
12.58m
37
Experiment
4DNEXJWU2N8Q
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFICJDNDZP
16.79m
54