ExperimentSetReplicate

ExperimentSet4DNESCWV8EX7
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 15 days to ventricular cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXFUJ2M55
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI13N4FMB
52.57m
45.8m
Experiment
4DNEXPNF2HQZ
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFITMA1BDN
45.92m
40.36m
Experiment
4DNEXJWU2N8Q
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFIYLO35EF
51.11m
45.12m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXFUJ2M55
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI92F5LME
15.1m
44
Experiment
4DNEXPNF2HQZ
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI11VJ9WC
12.58m
37
Experiment
4DNEXJWU2N8Q
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFICJDNDZP
16.79m
54