ExperimentSetReplicate

ExperimentSet4DNESCTYU1WN
released

Replicates of in situ-Hi-C on Sox2 tagged F123 ES cells wih 4 CTCF binding sites introduced between Sox2 and its Super Enhancer

   August 13th, 2020 at 6:00pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
RMCE
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESCTYU1WN
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIEQSF599
759.68m
64.29%
22.175%
13.534%
File
Contact List-replicate (pairs)
4DNFI5MVT2FU
368.19m
63.786%
22.919%
13.296%
File
Contact List-replicate (pairs)
4DNFISWDQZW7
391.49m
64.765%
21.477%
13.758%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESCTYU1WN
Multiple Experiments
File
Contact Matrix (mcool)
4DNFITSJBJ9G
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFII5QHM89
594.26m
7.31%
15.899%
8.13%
6.703%
0.139%
File
Alignments (bam)
4DNFIAHJLVRB
632.82m
7.1%
15.903%
8.61%
6.524%
0.141%