ExperimentSetReplicate

ExperimentSet4DNESCJHJ477
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - 0.5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESCJHJ477
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIUFK4VUI
69.06m
53.976%
14.327%
31.697%
Experiment
4DNEX1G6W7DD
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFILNZK66A
69.06m
53.976%
14.327%
31.697%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1G6W7DD
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIZ5DW87I
142.14m
12.924%
24.36%
14.122%
0.004%
0.144%