ExperimentSetReplicate

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ExperimentSet4DNESC4AGERI
released
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pADamID for pADam-only control on Hap1 wildtype cells, to probe unspecific pA-Dam binding (not an issue for lamina pA-DamID given abundant specific interactions)

   December 20th, 2019 at 10:12am
Source Publication
Cell cycle dynamics of lamina-associated DNA.
van Schaik T, Vos M, et al., EMBO reports 2020

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HAP-1 (Tier 2)
Experiment Type(s) 
pA-DamID
Modification Type 
None
Treatment Type 
None
Assay Details 
None

21 Processed Files

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Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESC4AGERI
Multiple Experiments
File
4DNFIJD6PC8Y
normalized counts (bw)
2.12 MB
File
4DNFI2S5DYF7
LADs (bed)
16.94 kB
Experiment
4DNEXFU4NQC3
Bio Rep 1, Tec Rep 1
pA-DamID on HAP-1 (Tier 2)
File
4DNFISRGTLXX
alignments (bam)
232.06 MB
File
4DNFIE5IIBD7
normalized counts (bw)
1.37 MB
File
4DNFIXIXMKVF
LADs (bed)
150.99 kB
Experiment
4DNEXRU64I1K
Bio Rep 2, Tec Rep 1
pA-DamID on HAP-1 (Tier 2)
File
4DNFIJA26CG8
alignments (bam)
73.75 MB
File
4DNFIMMOYJCP
normalized counts (bw)
1.19 MB
File
4DNFI9W6O3R7
LADs (bed)
489 Bytes
Experiment
4DNEXWMC9UET
Bio Rep 3, Tec Rep 1
pA-DamID on HAP-1 (Tier 2)
File
4DNFI6GYOYAK
alignments (bam)
244.37 MB
File
4DNFIX3QIINT
normalized counts (bw)
1.26 MB
File
4DNFITHD6PYS
LADs (bed)
123.3 kB
Experiment
4DNEXVVOUTW9
Bio Rep 4, Tec Rep 1
pA-DamID on HAP-1 (Tier 2)
File
4DNFI2PW998J
alignments (bam)
410.07 MB
File
4DNFIH32JBE3
normalized counts (bw)
1.31 MB
File
4DNFIM1A5C19
LADs (bed)
96.03 kB
Experiment
4DNEX4AXLG6N
Bio Rep 5, Tec Rep 1
pA-DamID on HAP-1 (Tier 2)
File
4DNFIHM2UAQV
alignments (bam)
238.25 MB
File
4DNFIJJ7N656
normalized counts (bw)
1.26 MB
File
4DNFIG2YWB1N
LADs (bed)
126.57 kB
Experiment
4DNEXYZYQDZ6
Bio Rep 6, Tec Rep 1
pA-DamID on HAP-1 (Tier 2)
File
4DNFIRL5CY19
alignments (bam)
192.52 MB
File
4DNFI27CK6JD
alignments (bam)
87.57 MB
File
4DNFIXCD2RKJ
normalized counts (bw)
1.29 MB
File
4DNFILHTLAWD
LADs (bed)
2.69 kB