ExperimentSetReplicate

ExperimentSet4DNESC1DDSAH
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Multiplexed FISH in human chromosome 21

   September 29th, 2023 at 6:04pm
Source Publication
Spatial organization of chromatin domains and compartments in single chromosomes.
Wang S, Su JH, et al., Science (New York, N.Y.) 2016

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
IMR-90
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 17 TADs on Chr21 #1-17, 17 TADs on Chr21 #18-34, 34 TADs on Chr21 #1-34
Channel
Imaging Rounds
Path
 
ch00
1-17
17 TADs on Chr21 #1-17 targeted by Alexa Fluor 647-labeled imaging oligos
ch01
1-17
17 TADs on Chr21 #18-34 targeted by ATTO 565-labeled imaging oligos
ch02
0
34 TADs on Chr21 #1-34 targeted by Alexa Fluor 647-labeled imaging oligos
ch03
-
fluorophore-labeled fiducial beads

1 Processed File

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESC1DDSAH
Multiple Experiments
File
4DNFIW2N41FQ
FOF-CT - DNA-spot/trace core (csv)
225.94 kB
Experiment
File
File Type
File Size
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4DNEXV75XMV5
Bio Rep 1, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
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4DNEXV4TSP4H
Bio Rep 2, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
Experiment
4DNEXJ8NHPUY
Bio Rep 3, Tec Rep 1
multiplexed FISH on IMR-90
-
-
-
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