ExperimentSetReplicate

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ExperimentSet4DNESC14YQV5
released
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ChIP-seq for Smc3-WT-biotin on 72 hour activated B cells (Smc3-WT Transduction)

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
B cell derived cell line
Experiment Type(s) 
ChIP-seq
Modification Type 
Stable Transfection
Treatment Type 
Chemical
Assay Details 
Target: Smc3 mouse protein

5 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNESC14YQV5
Multiple Experiments
File
4DNFIFMZ927F
peaks (bigbed)
1.02 MB
File
4DNFI4EAFDCT
conservative peaks (bigbed)
1.01 MB
File
4DNFIMLXMDMI
signal fold change (bw)
821 MB
Experiment
4DNEXVACMM7F
Bio Rep 1, Tec Rep 1
ChIP-seq against Smc3 mouse protein on B cell derived cell line
File
4DNFICC876YF
read positions (bed)
149.27 MB
Experiment
4DNEXLHMSL18
Bio Rep 2, Tec Rep 1
ChIP-seq against Smc3 mouse protein on B cell derived cell line
File
4DNFIT5LDCRD
read positions (bed)
116.9 MB

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXVACMM7F
Bio Rep 1, Tec Rep 1
ChIP-seq against Smc3 mouse protein on B cell derived cell line
File
Read Positions (bed)
4DNFICC876YF
0.91
0.92
22.98m
Experiment
4DNEXLHMSL18
Bio Rep 2, Tec Rep 1
ChIP-seq against Smc3 mouse protein on B cell derived cell line
File
Read Positions (bed)
4DNFIT5LDCRD
0.91
0.92
17.81m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESC14YQV5
Multiple Experiments
File
Peaks (bigbed)
4DNFIFMZ927F
26.61k
1.01
1.11
0.06