ExperimentSetReplicate

ExperimentSet4DNESBMXMM6M
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Set of Inputs for Replicates of DDX39B TSA-seq version 2 Reaction Condition 3' (PBS 50% Sucrose plus 1.5 mM DTT) 30 minute Reaction on Auxin treated HCT116 SON SRRM2 double degron cells

   December 19th, 2024 at 7:28pm
Source Publication
Highly active chromosome regions preferentially associate with two perispeckle networks that partition the interchromatin space
Venkata NC, Kim J, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
TSA-seq
Modification Type 
Crispr
Treatment Type 
Chemical
Assay Details 
Target: DDX39B protein

2 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSPK4WZYH
Bio Replicate 1
Experiment
4DNEXT9SZLLC
Tech Replicate 1
File
File
4DNFIYLPIGNV
2.48 GB
100
  Pass
62.34m
Biosample
4DNBSE1H2XNF
Bio Replicate 2
Experiment
4DNEXRYNND7E
Tech Replicate 1
File
File
4DNFIKWWLGL4
3.88 GB
100
  Pass
97.23m