ExperimentSetReplicate

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ExperimentSet4DNESBKGA5V9
released

in situ Hi-C on mitotically synchronized DMSO treated hTert-RPE1 FKBP12F36V-NIPBL clone D7- 0 min post release

   October 17th, 2024 at 9:16pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: Arima - A1, A2

7 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESBKGA5V9
Multiple Experiments
contact list-combined (pairs)
11.35 GB
contact matrix (hic)
3.52 GB
contact matrix (mcool)
2.44 GB
alignments (bam)
62.15 GB
contact list-replicate (pairs)
6.03 GB
alignments (bam)
69.28 GB
contact list-replicate (pairs)
6.47 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESBKGA5V9
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPYJETWQ
673.23m
74.422%
22.662%
2.916%
File
Contact List-replicate (pairs)
4DNFI9NNMPRJ
350.19m
74.614%
21.685%
3.701%
File
Contact List-replicate (pairs)
4DNFIUTKKY2M
374.22m
74.008%
22.777%
3.216%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESBKGA5V9
Multiple Experiments
File
Contact Matrix (mcool)
4DNFISL9BRTA
1000; 2000; 5000; 10000; 25000; 50000; 100000; 250000; 500000; 1000000