ExperimentSetReplicate

ExperimentSet4DNESBH54BG2
released
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Chromatin tracing (ORCA) of a 3-Mb region at the chr3 locus in mESC RAD21-AID + auxin

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with Rad21-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
  1. Target: 3-Mb chr6 (mouse)
  2. Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch02
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXWW8PVEW
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFI1MBPSTC
FOF-CT - DNA-spot/trace core (csv)
8.37 MB
File
4DNFIU1M6EQD
FOF-CT - spot quality (csv)
2.39 MB
File
4DNFIEAD3J8Q
FOF-CT - trace data (csv)
24.43 kB
Experiment
4DNEXJ7Q6NAT
Bio Rep 1, Tec Rep 2
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFIHA5PA9U
FOF-CT - DNA-spot/trace core (csv)
6.59 MB
File
4DNFICDV29XY
FOF-CT - spot quality (csv)
1.88 MB
File
4DNFIJWEA37W
FOF-CT - trace data (csv)
20.66 kB
Experiment
4DNEXPQST1SA
Bio Rep 2, Tec Rep 1
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFIDNY8W7L
FOF-CT - DNA-spot/trace core (csv)
34.09 MB
File
4DNFIC7ZIV5L
FOF-CT - spot quality (csv)
9.48 MB
File
4DNFI3RH93SR
FOF-CT - trace data (csv)
95.93 kB
File
4DNFI4VI51YD
FOF-CT - cell data (csv)
127.11 kB