ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNESAXNFKMM
released
View JSON

Replicates of RNA-DNA SPRITE on pSM33 cells

   November 15th, 2018 at 6:09pm
Source Publication
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.
Quinodoz SA, Ollikainen N, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
pSM33 with insertion of Tet-On activator M2rtTA at ROSA26, targeted integration of Xist with dox-inducible promoter
Experiment Type(s) 
RNA-DNA SPRITE
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
None

4 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSAPE2VOP
Bio Replicate 1
Experiment
4DNEXXQAJKZY
Tech Replicate 1
Pair
File
4DNFI8Q2U4HL
12.18 GB
35-158
  Pass
177.08m
File
4DNFIQ27DI7K
12.87 GB
35-158
  Pass
177.08m
Experiment
4DNEX7PYQKXX
Tech Replicate 2
Pair
File
4DNFIQXI45DR
11.02 GB
70
  Pass
200.51m
File
4DNFIPDBRTIH
19.21 GB
145
  Pass
200.51m