ExperimentSetReplicate

ExperimentSet4DNESAWC3AGQ
released
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RNA-seq on GFP+ Foxp3 KIKO Treg cells isolated from thymus

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
"wannabe" Treg - thymus - Foxp3-KO
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXTMVM1RS
Bio Rep 1, Tec Rep 1
RNA-seq on "wannabe" Treg - thymus - Foxp3-KO
File
Read Positions (bam)
4DNFIO3ZIH7C
3.85m
3.55m
Experiment
4DNEXE41NRW2
Bio Rep 2, Tec Rep 1
RNA-seq on "wannabe" Treg - thymus - Foxp3-KO
File
Read Positions (bam)
4DNFIFNEWSS9
3.88m
3.59m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXTMVM1RS
Bio Rep 1, Tec Rep 1
RNA-seq on "wannabe" Treg - thymus - Foxp3-KO
File
Gene Expression (tsv)
4DNFISEWRRRD
3.93m
2.7k
Experiment
4DNEXE41NRW2
Bio Rep 2, Tec Rep 1
RNA-seq on "wannabe" Treg - thymus - Foxp3-KO
File
Gene Expression (tsv)
4DNFIEF3JNGR
3.81m
4.13k