ExperimentSetReplicate

ExperimentSet4DNESAM3IMUG
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - 3.5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESAM3IMUG
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIQIXZIHS
42.96m
46.497%
15.33%
38.172%
Experiment
4DNEXD354RGF
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIBGIS366
42.96m
46.497%
15.33%
38.172%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXD354RGF
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIA3ENTYS
95.9m
12.4%
23.718%
19.085%
0.005%
0.152%