ExperimentSetReplicate

ExperimentSet4DNESAL82BWY
released

Replicates of Hi-C on H9 hESC cells, containing a MYL2-H2B-GFP marker for cardiocytes, at day 15 differentiation - primitive cardiomyocytes.

   August 7th, 2019 at 5:53pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H9 with targeted integration of GFP-tagged MYL2 differentiated to primitive cardiac myocyte
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESAL82BWY
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIFN1RUOT
2.28 billion
56.629%
22.149%
21.222%
File
Contact List-replicate (pairs)
4DNFI342YZAY
1.11 billion
56.561%
22.069%
21.37%
File
Contact List-replicate (pairs)
4DNFIKW5EUAV
1.17 billion
56.694%
22.224%
21.082%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIT8TG117
1.75 billion
8.26%
10.841%
12.73%
4.688%
0.096%
File
Alignments (bam)
4DNFITS5MY1X
1.97 billion
8.111%
11.35%
16.314%
4.964%
0.095%