ExperimentSetReplicate

ExperimentSet4DNESABJHVOM
released
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Hi-C on conventional T cells (Tcon cells) isolated from the spleen

   May 2nd, 2023 at 9:14pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Tcon - spleen Foxp3-
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESABJHVOM
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIMHNE9TI
415.36m
57.862%
13.81%
28.329%
Experiment
4DNEX2XS5TBE
Bio Rep 1, Tec Rep 1
in situ Hi-C on Tcon - spleen Foxp3- with MboI
File
Contact List-replicate (pairs)
4DNFIROKJOKO
196.89m
58.182%
14.031%
27.787%
Experiment
4DNEXREMZM5F
Bio Rep 2, Tec Rep 1
in situ Hi-C on Tcon - spleen Foxp3- with MboI
File
Contact List-replicate (pairs)
4DNFIJXPVLSU
218.47m
57.573%
13.61%
28.817%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESABJHVOM
Multiple Experiments
File
Contact Matrix (mcool)
4DNFITT45LD2
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX2XS5TBE
Bio Rep 1, Tec Rep 1
in situ Hi-C on Tcon - spleen Foxp3- with MboI
File
Alignments (bam)
4DNFIHKD5MSG
291.85m
4.999%
10.547%
7.656%
9.334%
0.131%
Experiment
4DNEXREMZM5F
Bio Rep 2, Tec Rep 1
in situ Hi-C on Tcon - spleen Foxp3- with MboI
File
Alignments (bam)
4DNFIWZPLE8F
323.76m
5.008%
10.605%
8.009%
8.898%
0.134%