ExperimentSetReplicate

ExperimentSet4DNESA8L78PL
released
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RNA-seq on DMSO treated HCT116 cells containing SON and SRRM2 auxin induced degron tags

   July 23rd, 2025 at 9:12pm
Source Publication
Highly active chromosome regions preferentially associate with two perispeckle networks that partition the interchromatin space
Venkata NC, Kim J, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
Chemical
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXJDBWSNP
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFIWR2J723
697.5m
654.52m
Experiment
4DNEXT33TSI4
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFIH25IRBH
354.43m
329.22m
Experiment
4DNEX4A3RB71
Bio Rep 3, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFID2JCX7T
334.31m
310.11m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXJDBWSNP
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFIKER7ILH
1.05 billion
174
Experiment
4DNEXT33TSI4
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFITH5FILP
544.76m
706
Experiment
4DNEX4A3RB71
Bio Rep 3, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFIVBY1F9G
519.43m
1.03k