ExperimentSetReplicate

ExperimentSet4DNESA2GN9N4
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 2 - 0.5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESA2GN9N4
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIVFQSD7B
48.6m
55.085%
20.782%
24.133%
Experiment
4DNEXYQOTP2H
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFISP37XHT
48.6m
55.085%
20.782%
24.133%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXYQOTP2H
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIH8ZSK7J
97.22m
15.217%
23.533%
11.252%
0.007%
0.18%