ExperimentSetReplicate

ExperimentSet4DNES9ZDUTHD
released
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in situ Hi-C on untreated and unmodified WTC-11 iPSC cells differentiated for 20 days to cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES9ZDUTHD
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOMLYIPL
790.47m
41.178%
47.436%
11.386%
Experiment
4DNEXT18JARG
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIHDSCJSZ
440.54m
41.768%
46.407%
11.825%
Experiment
4DNEXOWNXD66
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFI5LKIGNJ
405.5m
40.957%
46.432%
12.61%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES9ZDUTHD
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIHFX73VQ
None