ExperimentSetReplicate

ExperimentSet4DNES8IIWFGK
released

Replicates of Hi-C on H9 hESC cells, containing a MYL2-H2B-GFP marker for cardiocytes, at day 2 differentiation - mesoderm.

   August 7th, 2019 at 5:53pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H9 with targeted integration of GFP-tagged MYL2 differentiated to mesoderm
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES8IIWFGK
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIDXZIA5T
2.27 billion
54.383%
21.778%
23.839%
File
Contact List-replicate (pairs)
4DNFIM9NU8I6
1.12 billion
54.169%
25.542%
20.289%
File
Contact List-replicate (pairs)
4DNFIKPHWL44
1.15 billion
54.593%
18.103%
27.305%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIZGGBE3K
1.79 billion
8.151%
11.046%
13.282%
4.841%
0.081%
File
Alignments (bam)
4DNFI5H4VH3X
1.94 billion
7.856%
11.984%
16.11%
5.019%
0.1%