ExperimentSetReplicate

ExperimentSet4DNES8F5YXK1
released
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Replicates of CTCF ChIP-seq on CRISPR/cas9-modified Patski cells (Inv-Dxz4 clone a)

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: Ctcf mouse protein

4 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXZ8A17H5
Bio Rep 1, Tec Rep 1
ChIP-seq against Ctcf mouse protein on Patski
File
Read Positions (bed)
4DNFIECXRFZP
0.7
0.7
8.8m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNES8F5YXK1
Multiple Experiments
File
Peaks (bigbed)
4DNFINJSXGJB
9.94k
0.0
1.0
0.06