ExperimentSetReplicate

ExperimentSet4DNES8AWVQFH
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Replicates of RNA-seq on LMNA R225R homozygous clone 15 (corrected.1) hIPSCs differentiated into cardiomyocytes

   February 20th, 2019 at 3:42am
Source Publication
Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy.
Bertero A, Fields PA, et al., The Journal of cell biology 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEX3G8LENV
Bio Rep 1, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Read Positions (bam)
4DNFIK51FMMW
21.97m
18.63m
Experiment
4DNEXQWDRRHR
Bio Rep 2, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Read Positions (bam)
4DNFIW88XY12
22.36m
19.15m
Experiment
4DNEXHFSEH9H
Bio Rep 3, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Read Positions (bam)
4DNFI7D1X9EB
23.84m
20.18m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEX3G8LENV
Bio Rep 1, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Gene Expression (tsv)
4DNFIBX37K6H
18.97m
146
Experiment
4DNEXQWDRRHR
Bio Rep 2, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Gene Expression (tsv)
4DNFIOW5O462
21.63m
104
Experiment
4DNEXHFSEH9H
Bio Rep 3, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Gene Expression (tsv)
4DNFI3HTY48O
23.21m
144