ExperimentSetReplicate

ExperimentSet4DNES88JTW1C
released
View JSON

Ab validation replicates of H3K27ac ChIP-seq on GM12878 cells - input

   November 14th, 2019 at 8:04pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM12878 (Tier 1)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX4OZ1WHT
Bio Rep 1, Tec Rep 1
ChIP-seq on GM12878 (Tier 1)
File
4DNFIONEGA19
read positions (bed)
172.8 MB
Experiment
4DNEXGH5158S
Bio Rep 2, Tec Rep 1
ChIP-seq on GM12878 (Tier 1)
File
4DNFI96QSZRU
read positions (bed)
156.54 MB

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX4OZ1WHT
Bio Rep 1, Tec Rep 1
ChIP-seq on GM12878 (Tier 1)
File
Read Positions (bed)
4DNFIONEGA19
0.97
0.97
10.44m
Experiment
4DNEXGH5158S
Bio Rep 2, Tec Rep 1
ChIP-seq on GM12878 (Tier 1)
File
Read Positions (bed)
4DNFI96QSZRU
0.97
0.97
9.47m