ExperimentSetReplicate

ExperimentSet4DNES8128EIS
released
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Early fraction S-phase Repliseq on IMR-90 Tier 1 cells - all cells were grown in a single culture and split into 2 batches prior to BrdU labeling and FACs sorting

   August 17th, 2017 at 4:08am

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
IMR-90 (Tier 1)
Experiment Type(s) 
2-stage Repli-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Fraction: early fraction of 2 fractions

4 Processed Files

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXJFQRJ38
Bio Rep 1, Tec Rep 1
2-stage Repli-seq on IMR-90 (Tier 1) S-phase early fraction
File
Alignments (bam)
4DNFIYQQ8I63
6.27m
2.271%
Experiment
4DNEXMHCH1TT
Bio Rep 2, Tec Rep 1
2-stage Repli-seq on IMR-90 (Tier 1) S-phase early fraction
File
Alignments (bam)
4DNFIVHBBG38
5.91m
3.396%