ExperimentSetReplicate

ExperimentSet4DNES7YXSK37
released
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HiC experiment done on brain microvascular endothelial cell (HBMEC)

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
brain microvascular endothelial cell
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7YXSK37
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIIDPB2DF
263.96m
44.012%
26.996%
28.991%
Experiment
4DNEXNFBLDCL
Bio Rep 2, Tec Rep 1
Dilution Hi-C on brain microvascular endothelial cell with HindIII
File
Contact List-replicate (pairs)
4DNFIHUXVEYU
100.55m
42.821%
25.284%
31.894%
Experiment
4DNEXY9H52UE
Bio Rep 1, Tec Rep 1
Dilution Hi-C on brain microvascular endothelial cell with HindIII
File
Contact List-replicate (pairs)
4DNFIQ9X577Y
163.41m
44.745%
28.049%
27.205%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7YXSK37
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI6RQX6BC
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXNFBLDCL
Bio Rep 2, Tec Rep 1
Dilution Hi-C on brain microvascular endothelial cell with HindIII
File
Alignments (bam)
4DNFIA34NAKS
163.01m
23.778%
13.313%
1.227%
0.001%
0.16%
Experiment
4DNEXY9H52UE
Bio Rep 1, Tec Rep 1
Dilution Hi-C on brain microvascular endothelial cell with HindIII
File
Alignments (bam)
4DNFIEA2SK7O
240.97m
16.334%
13.768%
2.082%
0.001%
0.167%