ExperimentSetReplicate

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ExperimentSet4DNES7X5GQUR
released
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Micro-C on JM8.N4 with Flavopiridol treatment to arrest Pol II release

   May 29th, 2019 at 6:06pm
Source Publication
Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding.
Hsieh TS, Cattoglio C, et al., Molecular cell 2020

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
JM8.N4 (Tier 2)
Experiment Type(s) 
Micro-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: MNase

6 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNES7X5GQUR
Multiple Experiments
File
4DNFI8HJHIYX
contact list-combined (pairs)
735.08 MB
-
File
4DNFIMYAVM1C
contact matrix (hic)
529.51 MB
-
File
4DNFIHPRTZDW
contact matrix (mcool)
313.38 MB
File
4DNFIW54UD37
compartments (bw)
189.86 kB
-
Experiment
4DNEXB69NOCX
Bio Rep 1, Tec Rep 1
Micro-C on JM8.N4 (Tier 2) with MNase
File
4DNFIUZJA74U
alignments (bam)
13.2 GB
-
File
4DNFIUTVHF29
contact list-replicate (pairs)
735.08 MB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES7X5GQUR
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI8HJHIYX
55.35m
35.305%
59.028%
5.668%
Experiment
4DNEXB69NOCX
Bio Rep 1, Tec Rep 1
Micro-C on JM8.N4 (Tier 2) with MNase
File
Contact List-replicate (pairs)
4DNFIUTVHF29
55.35m
35.305%
59.028%
5.668%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7X5GQUR
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIHPRTZDW
1000; 2000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXB69NOCX
Bio Rep 1, Tec Rep 1
Micro-C on JM8.N4 (Tier 2) with MNase
File
Alignments (bam)
4DNFIUZJA74U
79.35m
4.612%
9.99%
6.263%
9.376%
0.066%