ExperimentSetReplicate

ExperimentSet4DNES7UKQHOX
released
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Hi-C of CTCF-AID mouse embryonic stem cells treated with Auxin for 2 days

   November 7th, 2018 at 9:12pm
Source Publication
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Nora EP, Goloborodko A, et al., Cell 2017

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7UKQHOX
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIVG6W1BB
597.16m
48.901%
22.663%
28.436%
Experiment
4DNEX4DOY175
Bio Rep 1, Tec Rep 1
Dilution Hi-C on ES-E14TG2a with CTCF-AID with HindIII
File
Contact List-replicate (pairs)
4DNFIYY5A3Z5
524.53m
49.261%
21.813%
28.926%
Experiment
4DNEXM7DHG3P
Bio Rep 2, Tec Rep 1
Dilution Hi-C on ES-E14TG2a with CTCF-AID with HindIII
File
Contact List-replicate (pairs)
4DNFI5NU9WL7
72.63m
46.302%
28.798%
24.9%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7UKQHOX
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI5TWFPOL
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX4DOY175
Bio Rep 1, Tec Rep 1
Dilution Hi-C on ES-E14TG2a with CTCF-AID with HindIII
File
Alignments (bam)
4DNFI47I87QG
863.09m
10.079%
12.834%
10.263%
6.051%
0.092%
Experiment
4DNEXM7DHG3P
Bio Rep 2, Tec Rep 1
Dilution Hi-C on ES-E14TG2a with CTCF-AID with HindIII
File
Alignments (bam)
4DNFIH5W6GGV
111.3m
11.726%
20.484%
2.524%
0.005%
0.187%