ExperimentSetReplicate

ExperimentSet4DNES7UKQHOX
released

Hi-C of CTCF-AID mouse embryonic stem cells treated with Auxin for 2 days

   November 7th, 2018 at 9:12pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
ES-E14TG2a with random integration of EGFP and AID-tagged CTCF, Tir1 insertion
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7UKQHOX
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIVG6W1BB
597.16m
48.901%
22.663%
28.436%
File
Contact List-replicate (pairs)
4DNFIYY5A3Z5
524.53m
49.261%
21.813%
28.926%
File
Contact List-replicate (pairs)
4DNFI5NU9WL7
72.63m
46.302%
28.798%
24.9%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7UKQHOX
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI5TWFPOL
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFI47I87QG
863.09m
10.079%
12.834%
10.263%
6.051%
0.092%
File
Alignments (bam)
4DNFIH5W6GGV
111.3m
11.726%
20.484%
2.524%
0.005%
0.187%