ExperimentSetReplicate

ExperimentSet4DNES7R8BYB1
released
View JSON

in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 6 days to ventricular cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to primitive cardiac myocyte
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7R8BYB1
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIUJQ6X2L
1.38 billion
39.794%
42.096%
18.11%
Experiment
4DNEXFW84TA1
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIMTU1R5E
1.02 billion
37.99%
42.611%
19.399%
Experiment
4DNEXYDZ4GZM
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIG9OP691
458.8m
43.797%
38.336%
17.866%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7R8BYB1
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIRHM7URR
None