ExperimentSetReplicate

ExperimentSet4DNES7QY4JHS
released

Hi-C: Hela-Kyoto cells on G1 phase with SCC1 protein tagged with an AID system but not depleted

   February 20th, 2019 at 6:20pm

Assay Description  


Note on Processed Files  


Some annotated bam and pairs files generated in this Experiment Set may contain distinct reads that share the same identifier. This was caused by merging fastq files with integer identifiers (eg. @1, @2) during processing.

Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
  1. Crispr
  2. Stable Transfection
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7QY4JHS
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIZBL3UPT
359.17m
39.283%
54.604%
6.113%
Experiment
4DNEXZNWU1C8
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HeLa cell line with HindIII
File
Contact List-replicate (pairs)
4DNFICXB2AVK
149.85m
40.792%
52.739%
6.469%
Experiment
4DNEXE9YCQWG
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HeLa cell line with HindIII
File
Contact List-replicate (pairs)
4DNFI8P41QRA
209.32m
38.203%
55.939%
5.858%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7QY4JHS
Multiple Experiments
File
Contact Matrix (mcool)
4DNFISADX1H8
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXZNWU1C8
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HeLa cell line with HindIII
File
Alignments (bam)
4DNFIQ531UTR
197.12m
8.069%
13.955%
1.953%
0.001%
0.054%
Experiment
4DNEXE9YCQWG
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HeLa cell line with HindIII
File
Alignments (bam)
4DNFI54FMLDS
273.78m
6.991%
13.496%
3.058%
0.001%
0.057%