ExperimentSetReplicate

ExperimentSet4DNES7OJTW3H
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Multiplexed FISH in KP primary adenoma cancer cells where Rnf2 is degraded using dTAG-13 via FKBP12F36V degron tagged to the C-terminus of Rnf2

   May 27th, 2025 at 5:42pm
Source Publication
Tracing the evolution of single-cell cancer 3D genomes: an atlas for cancer gene discovery.
Liu M, Jin S, et al., bioRxiv : the preprint server for biology 2024

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
type II pneumocyte
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Total 473 TADs spanning between Chr1-Chr19 (mouse), Chromosomes
Channel
Imaging Rounds
Path
 
ch00
0
Light yellow fiducial beads for drift correction
ch01
1-50
~60kb feature-containing or central region of each of 473 TADs spanning from Chr1 to Ch19 targeted by Alexa 647-labelled imaging oligos
ch02
1-50
~60kb feature-containing or central region of each of 473 TADs spanning from Chr1 to Ch19 targeted by ATTO 565-labelled imaging oligos
ch03
0
Chromosomes targeted by DAPI

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXXQBDXWI
Bio Rep 1, Tec Rep 1
multiplexed FISH on type II pneumocyte
File
4DNFIRG8WLQ3
FOF-CT - DNA-spot/trace core (csv)
19.54 MB