ExperimentSetReplicate

ExperimentSet4DNES7HD8OOV
released
View JSON

RNA-seq on preimplantation mouse embryos collected at PN3 zygotic stage and cultured in vitro for 20 h with alpha-amanitin

   January 10th, 2020 at 3:45pm
Source Publication
Allelic reprogramming of 3D chromatin architecture during early mammalian development.
Du Z, Zheng H, et al., Nature 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
embryo
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
None

8 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXC5QS1R4
Bio Rep 1, Tec Rep 1
RNA-seq on embryo
File
Read Positions (bam)
4DNFIB4F7FLB
1.49m
1.14m
Experiment
4DNEXY2EB2PG
Bio Rep 2, Tec Rep 1
RNA-seq on embryo
File
Read Positions (bam)
4DNFIA99QW9V
9.67m
7.04m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXC5QS1R4
Bio Rep 1, Tec Rep 1
RNA-seq on embryo
File
Gene Expression (tsv)
4DNFI2E5QYBF
1.43m
908
Experiment
4DNEXY2EB2PG
Bio Rep 2, Tec Rep 1
RNA-seq on embryo
File
Gene Expression (tsv)
4DNFIPSA5HKO
9.64m
5.12k