ExperimentSetReplicate

ExperimentSet4DNES7CDN1M9
released
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in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 11 days to ventricular cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7CDN1M9
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIVIH7ZK3
1.16 billion
42.235%
45.259%
12.506%
Experiment
4DNEX6EQ7ZFI
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFI7JHO3O2
806.61m
42.281%
46.507%
11.212%
Experiment
4DNEXLZ6UKJF
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIGGOSRPD
439.68m
42.174%
40.709%
17.117%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7CDN1M9
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIYBBPZ1V
None