ExperimentSetReplicate

ExperimentSet4DNES72JG5A6
released
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RNA-seq on Wild-type Treg cells isolated from thymus - genotype CD45+CD4+CD8-CD25+Foxp3-Thy1.1+

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg - thymus - Foxp3-Thy1.1 WT
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXZPMPUXM
Bio Rep 1, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 WT
File
Read Positions (bam)
4DNFIXIQ2NU9
6.11m
5.69m
Experiment
4DNEX288HRLG
Bio Rep 2, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 WT
File
Read Positions (bam)
4DNFIOFGFC2T
6m
5.57m
Experiment
4DNEXY5HHLFT
Bio Rep 3, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 WT
File
Read Positions (bam)
4DNFIZBW8UH2
5.55m
5.15m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXZPMPUXM
Bio Rep 1, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 WT
File
Gene Expression (tsv)
4DNFIURUWIBM
5.6m
4.91k
Experiment
4DNEX288HRLG
Bio Rep 2, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 WT
File
Gene Expression (tsv)
4DNFIIU6P11D
5.27m
8.48k
Experiment
4DNEXY5HHLFT
Bio Rep 3, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 WT
File
Gene Expression (tsv)
4DNFIW4AVOMN
4.86m
6.3k