ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNES6ZVXH6F
released
View JSON

CTCF ChIP-seq on heterozygous Crispr modified TBX5 with 2 bp insertion causing frameshift WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes.

   December 18th, 2024 at 10:50pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: CTCF protein

5 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNES6ZVXH6F
Multiple Experiments
File
4DNFI8GD2YMB
peaks (bigbed)
2.76 MB
File
4DNFI4FY4TX6
conservative peaks (bigbed)
2.76 MB
File
4DNFIYT914XX
signal fold change (bw)
2.12 GB
Experiment
4DNEXJDNQ9HA
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
4DNFIHFFYGAN
read positions (bed)
1.06 GB
Experiment
4DNEX668KF4P
Bio Rep 2, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
4DNFIMOU4PM2
read positions (bed)
1.28 GB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXJDNQ9HA
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIHFFYGAN
0.85
0.85
65.09m
Experiment
4DNEX668KF4P
Bio Rep 2, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIMOU4PM2
0.88
0.88
78.68m