ExperimentSetReplicate

ExperimentSet4DNES6VPZLD6
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 1 - 1.5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES6VPZLD6
Multiple Experiments
File
Contact List-combined (pairs)
4DNFICVGFLP3
47.88m
45.516%
23.623%
30.861%
Experiment
4DNEXPL76563
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI2L2GMAO
47.88m
45.516%
23.623%
30.861%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES6VPZLD6
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIGLBK4QY
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPL76563
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIGYTRUO9
107.61m
15.767%
25.141%
14.591%
0.007%
0.185%