ExperimentSetReplicate

ExperimentSet4DNES6V4HVDE
released

HiC experiment done on SK-N-DZ treated with dimethylsulfoxide for 72 hours

   May 5th, 2017 at 6:44pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES6V4HVDE
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI97KGTX9
103.02m
13.534%
30.814%
55.652%
Experiment
4DNEXNIZPGD6
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-N-DZ with HindIII
File
Contact List-replicate (pairs)
4DNFIDP8MAP7
103.02m
13.534%
30.814%
55.652%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES6V4HVDE
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIHXCPUAP
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXNIZPGD6
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-N-DZ with HindIII
File
Alignments (bam)
4DNFI2913KM2
153.47m
12.861%
16.769%
3.236%
0.003%
0.302%