ExperimentSetReplicate

ExperimentSet4DNES6QYNQRD
released

in situ Hi-C on peripheral blood mononuclear lymphocytes of MCG044

   October 24th, 2024 at 10:15pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES6QYNQRD
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPWC9JOV
151.12m
47.113%
24.527%
28.36%
Experiment
4DNEXN6T9ZIZ
Bio Rep 1, Tec Rep 1
in situ Hi-C on MCG044 Peripheral blood monocytes with MboI
File
Contact List-replicate (pairs)
4DNFIR9CBT3S
168.35m
46.946%
23.774%
29.28%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES6QYNQRD
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIMEO4RBQ
None