ExperimentSetReplicate

ExperimentSet4DNES6NYRJYT
released
View JSON

RNA-seq on wild-type WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXF3WBUUQ
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFITDFSD5G
37.2m
32.42m
Experiment
4DNEXHVMWPP1
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI9J2VQP9
46.24m
41.06m
Experiment
4DNEXU5USZOK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFIVG99MJ4
49.68m
43.84m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXF3WBUUQ
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI2XCT9OH
41.55m
4.55k
Experiment
4DNEXHVMWPP1
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI6UKRHQ2
46.7m
3.28k
Experiment
4DNEXU5USZOK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFIICZ7UPL
51.37m
3.51k