ExperimentSetReplicate

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ExperimentSet4DNES6NYRJYT
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXF3WBUUQ
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFITDFSD5G
read positions (bam)
3.96 GB
File
4DNFIN9DYMOA
read counts (plus) (bw)
159.36 MB
File
4DNFIVMZJRBV
read counts (minus) (bw)
154.99 MB
File
4DNFI2XCT9OH
gene expression (tsv)
10.5 MB
File
4DNFI7AZIY7V
isoform expression (tsv)
29.86 MB
Experiment
4DNEXHVMWPP1
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI9J2VQP9
read positions (bam)
4.73 GB
File
4DNFI39HHFLJ
read counts (plus) (bw)
202.3 MB
File
4DNFI3KBK2OK
read counts (minus) (bw)
195.99 MB
File
4DNFI6UKRHQ2
gene expression (tsv)
10.51 MB
File
4DNFICB9L9E7
isoform expression (tsv)
29.85 MB
Experiment
4DNEXU5USZOK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIVG99MJ4
read positions (bam)
5.12 GB
File
4DNFIUUKXDT3
read counts (plus) (bw)
207.18 MB
File
4DNFIP87SV1P
read counts (minus) (bw)
199.34 MB
File
4DNFIICZ7UPL
gene expression (tsv)
10.51 MB
File
4DNFIEL15P7H
isoform expression (tsv)
29.86 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXF3WBUUQ
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFITDFSD5G
37.2m
32.42m
Experiment
4DNEXHVMWPP1
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI9J2VQP9
46.24m
41.06m
Experiment
4DNEXU5USZOK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFIVG99MJ4
49.68m
43.84m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXF3WBUUQ
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI2XCT9OH
41.55m
4.55k
Experiment
4DNEXHVMWPP1
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI6UKRHQ2
46.7m
3.28k
Experiment
4DNEXU5USZOK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFIICZ7UPL
51.37m
3.51k