ExperimentSetReplicate

ExperimentSet4DNES6MT2D6K
released
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DNase Hi-C on RUES2 iPSC cells - differentiation day 6 endothelial cell progenitors

   September 19th, 2022 at 4:03pm
Source Publication
Dynamic chromatin organization and regulatory interactions in human endothelial cell differentiation.
Alavattam KG, Mitzelfelt KA, et al., Stem cell reports 2022

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
RUES2 differentiated to endothelial progenitor cell
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES6MT2D6K
Multiple Experiments
File
Contact List-combined (pairs)
4DNFITUM51JH
195.9m
36.386%
47.668%
15.946%
Experiment
4DNEXMBTNXDO
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 differentiated to endothelial progenitor cell with DNaseI
File
Contact List-replicate (pairs)
4DNFIA8K6KY2
102.34m
35.927%
47.08%
16.993%
Experiment
4DNEX1G8JPA2
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 differentiated to endothelial progenitor cell with DNaseI
File
Contact List-replicate (pairs)
4DNFI1CFBP14
93.56m
36.887%
48.311%
14.801%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES6MT2D6K
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI3CTXDI2
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXMBTNXDO
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 differentiated to endothelial progenitor cell with DNaseI
File
Alignments (bam)
4DNFI45VH9O6
164.43m
13.219%
15.016%
4.374%
5.153%
0.25%
Experiment
4DNEX1G8JPA2
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 differentiated to endothelial progenitor cell with DNaseI
File
Alignments (bam)
4DNFID5MR3LU
143.66m
13.108%
13.556%
3.1%
5.105%
0.197%