ExperimentSetReplicate

ExperimentSet4DNES6GZ8UJF
released
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in situ Hi-C on cerebellum from C57BL/6J mouse postnatal day 22

   March 26th, 2022 at 10:32pm
Source Publication
Mega-Enhancer Bodies Organize Neuronal Long Genes in the Cerebellum.
Zhao Z, Parra OP, et al., bioRxiv : the preprint server for biology 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
cerebellum - PND 22
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

12 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES6GZ8UJF
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIJOXVYZI
1.12 billion
61.196%
18.323%
20.481%
Experiment
4DNEXFWDTSNQ
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellum - PND 22 with MboI
File
Contact List-replicate (pairs)
4DNFIE3DS4X2
384.88m
61.139%
18.789%
20.072%
Experiment
4DNEXG2PRJ1X
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellum - PND 22 with MboI
File
Contact List-replicate (pairs)
4DNFINVXV1QW
367.62m
61.087%
18.658%
20.255%
Experiment
4DNEXDEMJXRA
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellum - PND 22 with MboI
File
Contact List-replicate (pairs)
4DNFIDECE2TW
370.69m
61.363%
17.508%
21.129%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES6GZ8UJF
Multiple Experiments
File
Contact Matrix (mcool)
4DNFITPS8DCF
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXFWDTSNQ
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellum - PND 22 with MboI
File
Alignments (bam)
4DNFIS56QYZD
849.84m
31.732%
21.042%
1.937%
0.0%
0.03%
Experiment
4DNEXG2PRJ1X
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellum - PND 22 with MboI
File
Alignments (bam)
4DNFIH1W4UON
810.94m
31.286%
21.113%
2.268%
0.0%
0.03%
Experiment
4DNEXDEMJXRA
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellum - PND 22 with MboI
File
Alignments (bam)
4DNFIN48F2E9
843.84m
33.992%
20.531%
1.548%
0.0%
0.033%