ExperimentSetReplicate

ExperimentSet4DNES6E25MDL
released
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in situ Hi-C on DMSO treated hTert-RPE1 FKBP12F36V-NIPBL clone A2- 24 hr

   October 17th, 2024 at 9:16pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
dTAG-NIPBL hTERT-RPE-1 - clone A2
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: Arima - A1, A2

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES6E25MDL
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIDMBIMUH
1.95m
60.079%
30.984%
8.937%
Experiment
4DNEXLHWHH9I
Bio Rep 1, Tec Rep 1
in situ Hi-C on dTAG-NIPBL hTERT-RPE-1 - clone A2 with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFIP3Q5L54
2.23m
59.746%
30.694%
9.56%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES6E25MDL
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI3YMJ65W
1000; 2000; 5000; 10000