ExperimentSetReplicate

ExperimentSet4DNES673RT2N
released
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Hi-C on CD25+ Treg precursor cells isolated from thymus

   May 2nd, 2023 at 9:13pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg precursor - CD25+ Foxp3-
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES673RT2N
Multiple Experiments
File
Contact List-combined (pairs)
4DNFINVPMCQ6
37.65m
62.834%
16.633%
20.533%
Experiment
4DNEXOH7EMUY
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg precursor - CD25+ Foxp3- with MboI
File
Contact List-replicate (pairs)
4DNFI8N2Q7T5
17.7m
62.414%
16.989%
20.597%
Experiment
4DNEXQL1GD8U
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg precursor - CD25+ Foxp3- with MboI
File
Contact List-replicate (pairs)
4DNFIF3MSJN7
19.95m
63.206%
16.318%
20.476%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES673RT2N
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIXGI8GQY
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXOH7EMUY
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg precursor - CD25+ Foxp3- with MboI
File
Alignments (bam)
4DNFI3LI8MCQ
27.01m
4.953%
11.138%
9.332%
9.051%
0.124%
Experiment
4DNEXQL1GD8U
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg precursor - CD25+ Foxp3- with MboI
File
Alignments (bam)
4DNFIFWCIX7K
31.08m
5.193%
11.097%
9.578%
9.92%
0.122%