ExperimentSetReplicate

ExperimentSet4DNES64LTQ68
released
View JSON

ChIP-seq for CTCF on 30 hour activated B cells

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
B cell derived cell line
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Ctcf mouse protein

5 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXRSHA3DA
Bio Rep 1, Tec Rep 1
ChIP-seq against Ctcf mouse protein on B cell derived cell line
File
Read Positions (bed)
4DNFI9295QE8
0.77
0.79
31.93m
Experiment
4DNEX2LXSAZK
Bio Rep 2, Tec Rep 1
ChIP-seq against Ctcf mouse protein on B cell derived cell line
File
Read Positions (bed)
4DNFIUJYJ8IP
0.88
0.88
24.09m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNES64LTQ68
Multiple Experiments
File
Peaks (bigbed)
4DNFII2SOIBG
80.47k
1.13
1.45
0.27