ExperimentSetReplicate

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ExperimentSet4DNES5X392R6
released
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ChIP-seq in HCT116-RAD-mAC using antibody CTCF treated with auxin-0h

   June 28th, 2024 at 5:23pm
Source Publication
Multifaceted roles of cohesin in regulating transcriptional loops.
Kim M, Wang P, et al., bioRxiv : the preprint server for biology 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: CTCF protein

4 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNES5X392R6
Multiple Experiments
File
4DNFIT3E2YZZ
peaks (bigbed)
3.19 MB
File
4DNFICV2FQ1X
conservative peaks (bigbed)
3.19 MB
File
4DNFIEZNVVAH
signal fold change (bw)
1.27 GB
Experiment
4DNEXFB8OQ21
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on HCT116 (Tier 2)
File
4DNFIS2LOOJK
read positions (bed)
973.89 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXFB8OQ21
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on HCT116 (Tier 2)
File
Read Positions (bed)
4DNFIS2LOOJK
0.74
0.75
58.33m