ExperimentSetReplicate

ExperimentSet4DNES5R3NDIU
released
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This Replicate Set is derived from experiments performed on pooled mixtures of WTC-11 and NIH3T3 cells with 3% PF fixation. And raw files will contain reads from multiple cell types. Barcode information needs to used to obtain line specific reads. Processed files for this set will be specific to WTC-11 cells.

   February 19th, 2020 at 7:23pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
WTC-11 with MYL2-EGFP
Experiment Type(s) 
sci-Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

4 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSBMOL3WJ
Bio Replicate 1
Experiment
4DNEXFMVW2IZ
Tech Replicate 1
Pair 1
File
4DNFICGCDD9M
22.47 GB
251
  Pass
166.19m
File
4DNFIH35G7JL
21.12 GB
251
  Pass
166.19m
Pair 2
File
4DNFIML8KABM
21.78 GB
251
  Pass
161.84m
File
4DNFI6BJAAXV
20.59 GB
251
  Pass
161.84m