ExperimentSetReplicate

ExperimentSet4DNES5OD1X3P
released
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RNA-seq on Foxp3 domain-swap mutant (DSM) Treg cells isolated from thymus - genotype CD45+CD4+CD8-CD25+Foxp3-DSM

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg - thymus - Foxp3-Thy1.1 DSM
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXTN8H9UZ
Bio Rep 1, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 DSM
File
Read Positions (bam)
4DNFIKP7F8AN
7.71m
7.15m
Experiment
4DNEXJDV8R1F
Bio Rep 2, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 DSM
File
Read Positions (bam)
4DNFIJ6LK43U
4.05m
3.73m
Experiment
4DNEX4PADLSB
Bio Rep 3, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 DSM
File
Read Positions (bam)
4DNFI3Q6IBGY
6.54m
6.03m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXTN8H9UZ
Bio Rep 1, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 DSM
File
Gene Expression (tsv)
4DNFIB4F888M
6.99m
6.43k
Experiment
4DNEXJDV8R1F
Bio Rep 2, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 DSM
File
Gene Expression (tsv)
4DNFIFSGJKOT
3.88m
3.07k
Experiment
4DNEX4PADLSB
Bio Rep 3, Tec Rep 1
RNA-seq on Treg - thymus - Foxp3-Thy1.1 DSM
File
Gene Expression (tsv)
4DNFIBA86KEH
6.5m
5.41k