ExperimentSetReplicate

ExperimentSet4DNES5JU7CSI
released
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RNA-seq on Foxp3-low Treg precursor cells isolated from thymus

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg precursor - CD25+ Foxp3-low
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXUHXTGDB
Bio Rep 1, Tec Rep 1
RNA-seq on Treg precursor - CD25+ Foxp3-low
File
Read Positions (bam)
4DNFIS3W62TR
3.79m
3.54m
Experiment
4DNEXM5QR9YJ
Bio Rep 2, Tec Rep 1
RNA-seq on Treg precursor - CD25+ Foxp3-low
File
Read Positions (bam)
4DNFIBOEKCU4
4.27m
3.98m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXUHXTGDB
Bio Rep 1, Tec Rep 1
RNA-seq on Treg precursor - CD25+ Foxp3-low
File
Gene Expression (tsv)
4DNFI591Y2L5
3.84m
2.64k
Experiment
4DNEXM5QR9YJ
Bio Rep 2, Tec Rep 1
RNA-seq on Treg precursor - CD25+ Foxp3-low
File
Gene Expression (tsv)
4DNFI4E3JX86
4.19m
2.51k