ExperimentSetReplicate

ExperimentSet4DNES5GB1X5P
released
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in situ Hi-C on synchronyzed HeLa cells - Replicate 1 - 11 hours after release from prometaphase arrest

   August 16th, 2019 at 8:45pm
Source Publication
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase.
Abramo K, Valton AL, et al., Nature cell biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES5GB1X5P
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIF53GXDZ
32.26m
35.716%
25.352%
38.932%
Experiment
4DNEXX5CC6LB
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIH43DAHM
32.26m
35.716%
25.352%
38.932%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES5GB1X5P
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIS3EQVA3
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXX5CC6LB
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIUMKVUR3
69.05m
14.828%
24.222%
14.22%
0.007%
0.191%