ExperimentSet4DNES5FOV49M
released
February 1st, 2021 at 8:45pm
Data Usage Guidelines
Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
in vitro differentiated cells
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Target: Smc1a (mouse)
9 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEXL9FIDCY
Bio Rep 1, Tec Rep 1
PLAC-seq against Smc1a (mouse) on F121-9-CASTx129 (Tier 2) differentiated to epiblast cellExperiment
4DNEXQ21PRZG
Bio Rep 2, Tec Rep 1
PLAC-seq against Smc1a (mouse) on F121-9-CASTx129 (Tier 2) differentiated to epiblast cellExperiment
4DNEXEPR9FMN
Bio Rep 3, Tec Rep 1
PLAC-seq against Smc1a (mouse) on F121-9-CASTx129 (Tier 2) differentiated to epiblast cellExperiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXL9FIDCY
Bio Rep 1, Tec Rep 1
PLAC-seq against Smc1a (mouse) on F121-9-CASTx129 (Tier 2) differentiated to epiblast cellExperiment
4DNEXQ21PRZG
Bio Rep 2, Tec Rep 1
PLAC-seq against Smc1a (mouse) on F121-9-CASTx129 (Tier 2) differentiated to epiblast cellExperiment
4DNEXEPR9FMN
Bio Rep 3, Tec Rep 1
PLAC-seq against Smc1a (mouse) on F121-9-CASTx129 (Tier 2) differentiated to epiblast cell